I ran GATK CNVs pipeline for germline detection. Two of 153 human exomes samples show increased (3 rather than 2) ploidy at some chromosomes. I would like to check further which regions of those chromosomes are responsible for that. Is possible to analyze that from the Contig Ploidy section of the pipeline? Since the contig priors are divided by chromosomes, it did not seem possible but I would like to check with others with previous experience on human exome analysis.