Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

VariantRecalibrator error


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    Laura Gauthier

    Hi Laura Sanz,

    Since this exception is coming from TabixIteratorLineReader I wonder if there's something wrong with the index.  Can you try recreating the index with GATK's IndexFeatureFile?  It should be pretty quick.

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