Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

PathSeq Pre-built DB Breakdown Per Microbial Group


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    Mark Walker

    Hello Renald James Legaspi,

    You could infer that from the list of microbes here:


    You can use this along with the taxdump file to reconstruct the tree and count up the number of organisms at each taxonomic level:


    More on the taxdump file format can be found here:

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