Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

False positive INDELs by Mutect2


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    David Benjamin

    Safina Most of the time this behavior is correct and becomes apparent in the bam-out file.  Could you view that in IGV and post a screenshot?

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