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Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Mutect2 - No .stats file created with SLURM



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    Hi Ryan Yordanoff

    It may be related to the temporary folder used by the slurm process being wiped out before the java VM is closed. Can you try moving the temporary folder for Mutect2 to somewhere you have read write access such as ./tmp ? 

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    Ryan Yordanoff

    Yes this worked! Added the --tmp-dir argument to achieve. Thanks.

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