CONVERT BAM TO U-BAM

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Elin Mehrasa

• April 27, 2023 23:17

REQUIRED for all errors and issues:
a) GATK version used: 22.9.0
b) Exact command used: for f in ${OUTPUT_DIR}/*aligned.bam; do picard RevertSam I=$f O=${f/aligned.bam/unaligned.bam} ATTRIBUTE_TO_CLEAR=XS ATTRIBUTE_TO_CLEAR=XA ; done

c) Entire program log: 

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  Chris Kachulis

  • May 12, 2023 19:47

  Hi Elin Mehrasa,
  It looks like perhaps the question here is not completed?  If you are still running into issues could you add some more details about the problem? 

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