Hello, I have installed GATK4 (version 4.4.0) in a docker container in MacOS following the published instructions (https://gatk.broadinstitute.org/hc/en-us/articles/360035889991). I also created a link to the reads and reference data outside the container (mount volume). Everything works fine, but the additional packages (fastqc, bwa) are are not in the pulled docker image, and I have been trying to figure out how to install them inside the container to have all the packages in one place. Is that possible?
Thank you, Marcela
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