Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Why are full regions removed in the bamout file of Mutect2 when compared to the input files?

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    David Benjamin

    The bamout only contains regions where local assembly occurred due to the possiblity of somatic variation.

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