Can DRAGEN-GATK be applied to DNBSEQ?

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rq m

• March 19, 2023 03:02

I used BGI's DNBSEQ for sequencing. Can DRAGEN-GATK be applied to DNBSEQ data?

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  James Emery

  • March 20, 2023 17:21

  Hello rq m. We are not familiar with DNBSEQ data and have not tested the DRAGEN-GATK pipeline on it. It is possible that DRAGEN-GATK will work well in your use-case (though the tool was designed to run on Illumina paired-end data) but it is an unsupported use case that might require some work. If you want documentation on what the DRAGEN-GATK pipeline is you can read about it here: 
  https://gatk.broadinstitute.org/hc/en-us/articles/4411716682011-Full-release-of-open-source-DRAGEN-GATK-1-0. 

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