Before using GATK, do I need to use short-read error correction tools such as RACER or HiTEC?

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rq m

• March 17, 2023 17:21
• Edited

Before using GATK, do I need to use short-read error correction tools such as RACER or HiTEC?

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  Louis Bergelson

  • March 20, 2023 17:23

  Hello, 

  Those tools aren't part of our standard pipeline and shouldn't be necessary for human genome calling with GATK.  I don't have any knowledge about those tools so I can't really say if they would be helpful or not.  

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