7 things I learned while reprocessing my WGS data on Terra: part 1

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KT Pickard

• June 14, 2021 21:49

If not an error, choose a category for your question(REQUIRED):
a) How do I debug GATK issues in Terra?

Hello,

I recently wrote a blog post that describes my first attempts at running GATK with my WGS data:

    https://genomedad.com/2021/06/13/7-things-i-learned-while-reprocessing-my-wgs-data-on-terra-part-1/

While running the workflow, I debugged issues with both CheckContamination and CheckFingerprint. If it would be useful for other new users, please consider posting it.

Cheers,

  -- KT

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  Pamela Bretscher

  • June 25, 2021 19:36

  Hi KT Pickard,

  Thank you for sharing! This will be very helpful for other users.

  Best,

  Pamela

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