I am trying to mark duplicates using the following command:
java -Xmx20g -jar /software/eucleia/Picard_v2.27.1/picard.jar MarkDuplicates INPUT=Sample_10-LOP-083.bam VALIDATION_STRINGENCY=LENIENT OUTPUT=test.dedup.bam METRICS_FILE=test
which works fine for small bam files, but not for files >15 GB. For large bam files, no output files are created!
Can you please help me with this?
Please sign in to leave a comment.