Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

BuildBamIndex

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    Anthony Dias-Ciarla

    Hi Robert Bremel,

    Thank you for writing to the GATK forum! Please include your entire command line and program log so that we can properly troubleshoot this issue.

    I look forward to hearing back from you soon!

    Best,

    Anthony

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    Robert Bremel

     

     

    ./gatk BuildBamIndex --INPUT fname.bam

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    Anthony Dias-Ciarla

    Hi Robert Bremel,

    Thank you for your previous response! It appears your copy and paste may have not been successful. Please include your entire program log/stack trace so that we can properly troubleshoot this issue.

    I look forward to hearing back from you soon!

    Best,

    Anthony

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    Anthony Dias-Ciarla

    Hi Robert Bremel,

    We haven't heard from you in a while so we're going to close out this ticket. If you still require assistance, simply respond to this email and we'll be happy to pick up where we left off!

    Kind regards,

    Anthony​

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