Announcements
Forum Bulletin
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Forum Guidelines
Welcome to the GATK Forum! The GATK community forum is a place to resolve GAT...
Blog
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Who's (Not) Afraid of the Batch Effect Boogeyman?
How do people deal with batch effects? Batch effects encompass all the ways t... -
Joint Calling and the Batch Effect Boogeyman
What happens if you don’t joint call all your samples together? Why do people... -
Masked reference genomes
The work presented here includes significant contributions from Pankaj Vats a... -
Introducing GATK "Biggest Practices" for Joint Calling Supersized Cohorts
DNA sequencing continues to get cheaper and cheaper as time goes on, which me... -
⚙️ GATK 4.3 release
The latest GATK release came out a few weeks ago, with changes corresponding... -
Introducing NVIDIA's NVScoreVariants, a new deep learning tool for filtering variants
If you know only one thing about NVIDIA, it's probably that they manufacture...
Events
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Upcoming GATK Workshop in Granada, Spain [Nov. 13-16, 2023]
On November 13-16, 2023, instructors from the Broad Institute will be teachin... -
Upcoming GATK Workshop in Taipei, Taiwan [Nov 13-16, 2023]
Sometime in October - December, 2023, instructors from the Broad Institute wi... -
Upcoming GATK Workshop in Gujarat, India [Jan. 17-19, 2024]
On January 17-19, 2024, instructors from the Broad Institute will be teaching... -
Upcoming GATK Workshop in San Pedro, Costa Rica [Feb. 5-8, 2024]
On February 5-8, 2024, instructors from the Broad Institute will be teaching ... -
🗓️ DRAGEN-GATK Webinar [Oct. 21, 2022]
This October 21, join us for an interactive online workshop on Whole-Genome ... -
DRAGEN-GATK Webinar [December 3, 2021]
In this webinar, participants learned about the whats, hows, and whys of this...
Note that the information in this documentation guide is targeted at end-users. For developers, the source code and related resources are available on GitHub.