Announcements
Forum Bulletin
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An announcement about temporary changes to the moderation of GATK forum and how it affects our users.
Due to latest spam attacks on GATK Zendesk pages, GATK team has decided to tu... -
Forum Guidelines
Welcome to the GATK Forum! The GATK community forum is a place to resolve GAT...
Blog
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Who's (Not) Afraid of the Batch Effect Boogeyman?
How do people deal with batch effects? Batch effects encompass all the ways t... -
Joint Calling and the Batch Effect Boogeyman
What happens if you don’t joint call all your samples together? Why do people... -
Masked reference genomes
The work presented here includes significant contributions from Pankaj Vats a... -
Introducing GATK "Biggest Practices" for Joint Calling Supersized Cohorts
DNA sequencing continues to get cheaper and cheaper as time goes on, which me... -
⚙️ GATK 4.3 release
The latest GATK release came out a few weeks ago, with changes corresponding... -
Introducing NVIDIA's NVScoreVariants, a new deep learning tool for filtering variants
If you know only one thing about NVIDIA, it's probably that they manufacture...
Events
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Upcoming GATK Workshop in Granada, Spain [Nov. 13-16, 2023]
On November 13-16, 2023, instructors from the Broad Institute will be teachin... -
Upcoming GATK Workshop in Taipei, Taiwan [Nov 13-16, 2023]
Sometime in October - December, 2023, instructors from the Broad Institute wi... -
Upcoming GATK Workshop in Gujarat, India [Jan. 17-19, 2024]
On January 17-19, 2024, instructors from the Broad Institute will be teaching... -
Upcoming GATK Workshop in San Pedro, Costa Rica [Feb. 5-8, 2024]
On February 5-8, 2024, instructors from the Broad Institute will be teaching ... -
🗓️ DRAGEN-GATK Webinar [Oct. 21, 2022]
This October 21, join us for an interactive online workshop on Whole-Genome ... -
DRAGEN-GATK Webinar [December 3, 2021]
In this webinar, participants learned about the whats, hows, and whys of this...
Note that the information in this documentation guide is targeted at end-users. For developers, the source code and related resources are available on GitHub.