Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

CigarContainsNoNOperator Follow

Avatar
GATK Team

Filter out reads with CIGAR containing N operator

Category Read Filters

Overview

Filter out reads containing skipped region from the reference (CIGAR strings with 'N' operator).

Return to top

GATK version 4.3.0.0 built at Wed, 12 Oct 2022 21:04:44 -0400.

0 comments

Please sign in to leave a comment.

Powered by Zendesk