Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

DetermineGermlineContigPloidy Follow

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    Adarsh P P

    I am trying to run the gCNV. But I am kind of stuck at running this tool, which requires me to give a --contig-ploidy-priors table. In the tutorial a the table is given for that example data.

    But I need to try this on my Exome data and there is no explaination given about how to make this table. The contigs for my data is very long and it is not easy to create manually.

    Please help me out about how to make this table.


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