Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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OverlappingErrorMetric Follow

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Metrics

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Overview

An error metric for the errors invovling bases in the overlapping region of a read-pair. The resulting metric includes error rate information which can be assigned to the reading of the molecular insert #DISAGREES_WITH_REF_AND_MATE_ONLY_Q, error rate which can be assigned to events that occured to to the molecular insert before it was loaded onto the flowcell/sequencer #DISAGREES_WITH_REFERENCE_ONLY_Q, and an error rate which cannot be explained nicely #THREE_WAYS_DISAGREEMENT_ONLY_Q.

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GATK version 4.2.6.0-SNAPSHOT built at Fri, 8 Apr 2022 12:41:23 -0700.

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