Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

UmiAwareMarkDuplicatesWithMateCigar (Picard) (EXPERIMENTAL) Follow

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    I was using this tool to mark duplicates for my Whole Genome Sequencing data. It is working perfectly when I had only one RG in my bam, but is not working with multilane merged bams (have more than 1 RG) , any idea why?



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