Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

DetermineGermlineContigPloidy Follow

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    Samuel Quaynor

    I ran the DetermineGermlineContigPloidy on my cohort set and I got the posterior_ploidies for each sample but funny enough, the results does not include chrY in any of the samples. Can you help me as to how to go about it?

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