List of samples that are not homozygous reference at a variant site (Samples)
Category Variant Annotations
OverviewList samples that are non-reference at a given variant site
The output is a list of the samples that are genotyped as having one or more variant alleles. This allows you to easily determine which samples are non-reference (heterozygous or homozygous-variant) and compare them to samples that are homozygous-reference. This annotation is particularly useful for large cohorts where the genotype fields are difficult to manually match with sample names.
GATK version 188.8.131.52-SNAPSHOT built at Thu, 16 Dec 2021 11:57:48 -0800.