Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

CountNs Follow

Avatar
GATK Team

Number of Ns at the pileup

Category Variant Annotations

Overview

Apply a read-based annotation that reports the number of Ns seen at a given site. This is intended for use on consensus called data.

Return to top

GATK version 4.2.3.0-SNAPSHOT built at Mon, 8 Nov 2021 14:59:32 -0800.

0 comments

Please sign in to leave a comment.

Powered by Zendesk