On November 17, 2020, instructors from the Broad Institute taught a 1-hr virtual webinar open to the GATK community. In this webinar, you will learn about how Mutect2 works, and see an example of how to run it in the cloud on Terra

Materials

You can find all the slides at http://broad.io/GATK2011. If you would like to follow along with this workshop, we will be using this workspace: https://app.terra.bio/#workspaces/help-gatk/Somatic-SNVs-Indels-GATK4 

Agenda & Video

The webinar recording can be found here. Time stamps below may reference specific workshop materials where relevant.

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​0:00:00 - Introduction

Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute

0:02:29 - Mutect 2 Slides (slides)

Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute

0:22:19 - Q&A

Instructors: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute

Mark Fleharty, Computational Scientist II, Data Sciences Platform, Broad Institute

Brian Haas, Sr. Computational Biologist II, Data Sciences Platform, Broad Institute

0:32:30​ - Mutect 2 Walkthrough (workspace)

Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute

0:55:27 - Q&A

Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute

Mark Fleharty, Computational Scientist II, Data Sciences Platform, Broad Institute

Brian Haas, Sr. Computational Biologist II, Data Sciences Platform, Broad Institute

Further Resources

For more information on GATK, visit https://gatk.broadinstitute.org

For more information on Terra, visit https://terra.bio/​