On November 17, 2020, instructors from the Broad Institute taught a 1-hr virtual webinar open to the GATK community. In this webinar, you will learn about how Mutect2 works, and see an example of how to run it in the cloud on Terra
Materials
You can find all the slides at http://broad.io/GATK2011. If you would like to follow along with this workshop, we will be using this workspace: https://app.terra.bio/#workspaces/help-gatk/Somatic-SNVs-Indels-GATK4
Agenda & Video
The webinar recording can be found here. Time stamps below may reference specific workshop materials where relevant.
0:00:00 - Introduction
Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute
0:02:29 - Mutect 2 Slides (slides)
Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute
0:22:19 - Q&A
Instructors: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute
Mark Fleharty, Computational Scientist II, Data Sciences Platform, Broad Institute
Brian Haas, Sr. Computational Biologist II, Data Sciences Platform, Broad Institute
0:32:30 - Mutect 2 Walkthrough (workspace)
Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute
0:55:27 - Q&A
Instructor: Derek Caetano-Anolles, Science Writer, Data Sciences Platform, Broad Institute
Mark Fleharty, Computational Scientist II, Data Sciences Platform, Broad Institute
Brian Haas, Sr. Computational Biologist II, Data Sciences Platform, Broad Institute
Further Resources
For more information on GATK, visit https://gatk.broadinstitute.org
For more information on Terra, visit https://terra.bio/
1 comment
In this webinar, you will learn about how Mutect2 works, and see an example of how to run it in the cloud on Terra.The webinar will cover somatic SNVs and Indels discovery using Mutect2 - a pipeline for calling somatic short mutations using local spacebar clicker assembly of haplotypes.Call somatic short mutations via local assembly of haplotypes. Short mutations include single nucleotide (SNA) and insertion and deletion (indel) alterations. Integrate your tools with the GDC and learn the SDK at our 'Integrating Analysis Tools with GDC' webinar. Dismiss. Skip Navigation. Login. Video Guides.
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