Keep only paired reads that are not properly paired
Category Read Filters
OverviewKeep only paired reads that are marked as not properly paired (0x1 and !0x2). Removes unpaired reads.
GATK version 184.108.40.206-SNAPSHOT built at Mon, 22 Feb 2021 13:44:49 -0800.
I want to use the tools NotProperlyPairedReadFilter ,and I don't find the usage .So I try to run it by the regular way (./gatk NotProperlyPairedReadFilter ,output A USER ERROR has occurred: 'NotProperlyPairedReadFilter' is not a valid command) ,so can you give me an example to use it ,Thankyou very much.
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