Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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CigarContainsNoNOperator Follow

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GATK Team

Filter out reads with CIGAR containing N operator

Category Read Filters

Overview

Filter out reads containing skipped region from the reference (CIGAR strings with 'N' operator).

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GATK version 4.1.9.0-SNAPSHOT built at Mon, 19 Oct 2020 11:41:12 -0400.

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