Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

DepthOfCoverage (BETA) Follow

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    Wei

    -ct or --summary_coverage_threshold are not working in GATK4.1.8?  

    It gave
    **BETA FEATURE - WORK IN PROGRESS**

    USAGE: DepthOfCoverage [arguments]

    Generate coverage summary information for reads data
    Version:4.1.8.1

    then available usage info not including above two options. Thanks!

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