Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

CombineGVCFs Follow


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    Zeng Jingyu

    Why not set an argument (like -L in bcftools) to put a list of GVCFs for combine? I think it's too annoying to put every GVCFs (in my case, 30 GVCFs) into the script for combination.

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    Zeng Jingyu

    At last, I used a for loop to add all the GVCFs, but I still suggest to have an argument for list.

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