Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

VariantAnnotator Follow

1 comment

  • Avatar
    Qihan Long

    Hi, nice documentation, but the demo commands have a minor problem

       VariantAnnotator \
       -R reference.fasta \
       -I input.bam \
       -V input.vcf \
       -o output.vcf \
       -A Coverage \
       --dbsnp dbsnp.vcf

    The output flag should be capitalized to "-O".

     

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk