Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

BwaMemIndexImageCreator Follow

1 comment

  • Avatar
    Ganesh P Kumar

    I am trying to create an Image Index file for PathSeq Pipeline. I am using the Microbiome reference fasta file of 250 GB is taking around 14 days to complete in server  Is there a way to reduce the time taken to complete the process?

    System configuration

    Processor: 2.30 GHz x64 core 

    RAM: 512 GB 

    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk