Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Ganesh P Kumar

    Hi, 
    I am trying to create an Image Index file for PathSeq Pipeline. I am using the Microbiome reference fasta file of 250 GB is taking around 14 days to complete in server  Is there a way to reduce the time taken to complete the process?

    System configuration

    Processor: 2.30 GHz x64 core 

    RAM: 512 GB 

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