Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

GetPileupSummaries Follow

1 comment

  • Avatar
    Adrián Segura

    In case of wanting to detect somatic variants of tumor samples, is it convenient to provide the tool (in -V or -L) with database files specialized in somatic mutations such as COSMIC?

    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk