Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Jonathan Klonowski

    What purpose does --pedigree serve?

    It says "Pedigree file for determining the population "founders"", but I do not understand what the output is or what that output can be used for.

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