Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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AlleleFrequency Follow

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GATK Team
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Stratify by eval RODs by the allele frequency of the alternate allele

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Stratifies the eval RODs by the allele frequency of the alternate allele Either uses a constant 0.005 frequency grid, and projects the AF INFO field value or logit scale from -30 to 30. Requires that AF be present in every ROD, otherwise this stratification throws an exception

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GATK version 4.1.4.1 built at Thu, 5 Dec 2019 09:51:56 -0500.

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