Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

MarkDuplicatesSpark Follow

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    Priyadarshini Thirunavukkarasu

    First, I sorted the unmapped and mapped bam files by queryname and merged these files and then sorted by coordinates. Can these merged bam files which are sorted by coordinates be used to mark duplicates by spark? Please advice



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