Keep records not matching the read group tag and exact match string.

Category Read Filters

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Overview

Keep records not matching the read group tag and exact match string.

For example, this filter value: PU:1000G-mpimg-080821-1_1 would filter out a read with the read group PU:1000G-mpimg-080821-1_1

ReadGroupBlackListReadFilter specific arguments

This table summarizes the command-line arguments that are specific to this tool. For more details on each argument, see the list further down below the table or click on an argument name to jump directly to that entry in the list.

Argument name(s)	Default value	Summary
Required Arguments
--read-group-black-list	[]	The name of the read group to filter out

Argument details

Arguments in this list are specific to this tool. Keep in mind that other arguments are available that are shared with other tools (e.g. command-line GATK arguments); see Inherited arguments above.

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--read-group-black-list / NA

The name of the read group to filter out

R List[String]  []

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GATK version 4.0.4.0 built at 02-47-2019 02:47:54.