Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Arye Harel

    Regarding the first Usage examples on top on of this page:

    What does -L 20 mean?

    If used, it gives the following Error:

    "A USER ERROR has occurred: Badly formed genome unclippedLoc: Query interval "20" is not valid for this input."

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