Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Arye Harel

    Regarding the first Usage examples on top on of this page:

    What does -L 20 mean?

    If used, it gives the following Error:

    "A USER ERROR has occurred: Badly formed genome unclippedLoc: Query interval "20" is not valid for this input."

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    sabrina legoueix

    Hi, I would like to run once genomicsdbimport with a first group of samples. Later on, I will need to add new samples (not yet available) and to add them to the gvcf database already created without starting from scratch. Is it possible to do so with genomicsdbimport? (that would avoid to use ressources twice and to save time) Thanks in advance.

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