Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Rachel Turba

    Is there a reason why would someone choose to --set-gt-to-nocall instead of --exclude-filtered from the file? I can see the benefit of the later making the file smaller, but what would be the benefit of the first?

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