Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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3 comments

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    lemon soft

    I need installation or copy precedures for my linux.

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    Kate Herman

    Hi lemon soft,

    The installation instructions above were written for use on Linux and Mac operating systems. You should be able to enter the commands as they are in the article. If you have any trouble, don't hesitate to reach out to our support staff over on our Community Forum.

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    Ana Marija

    Hello,

     

    I downloaded the zipped build from github. I unzipped it and there I have gatk-package-4.1.8.1-local.jar and gatk-package-4.1.8.1-spark.jar and I don't see GenomeAnalysisTK.jar script. Can you please tell me how to get is and where is the wrapper script you're mentioning in the post.

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