Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Errors in SAM or BAM files can be diagnosed with ValidateSamFile Follow

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    I am getting lots of reads with errors "RECORD_OUT_OF_ORDER".

    What exactly does this error mean?  Where can I get more information regarding what this error is and how to fix it? 


    Thank you.

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