Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Known Issues with Mutect2 GATK4.1 Follow

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    I'm getting this error on GATK4-

    It only seems to appear enabling `--mitochondria-mode true`, but I need this option.

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