Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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    Anup Agarwal

    What options need to be specified when spark is running over YARN in cluster mode. From what I understand, there is no spark daemon process listening for jobs, one simply submits jobs using spark-submit binary with the master as yarn and spark picks yarn config from $HADOOP_CONF_DIR. Is that mode not supported?

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