Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Base Quality Score Recalibration (BQSR) Follow

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    Nickier

    How to set a COMPRESSION_LEVEL of ApplyBQSR, I found that the output  bam file is twice the size of the original bam file while the the original bam is COMPRESSION_LEVEL=2

     
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