Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

How can I make GATK tools run faster? Follow

2 comments

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    Jaya Kishore E

    It's been 3 months since my request... 

     

    "Alternatively, our collaborators at the Intel-Broad Center for Genomic Data Engineering have done a ton of benchmarking and can provide you with recommended hardware configurations for local infrastructure based on your planned usage. Let us know in the comment thread if you'd like us to introduce you."

     

    Can you please introduce me to the team?

     

     

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    Jaya Kishore E

    Planning to GATK tool using GPUs, do you have documentation on how to run GATK using GPUs?

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