Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Data pre-processing for variant discovery Follow


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    Robert Bremel

    It would be good to point out that the fastq --> bam needs to include the read group tags because they are needed at the recalibrate base quality scores stage of the process and later

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    Kountay Dwivedi


    I am a Junior Researcher, and I need to familiarise myself with GATK Best Practices. But I cannot find out sample dataset to test Data Pre-processing. Please help me out. Thanks. 

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