Purpose
Identify somatic copy number variant (CNVs) in a case sample. Requires an appropriate Panel of Normals (PON).
Reference Implementations
Pipeline | Summary | Notes | Github | Terra |
---|---|---|---|---|
Somatic CNV case sample | Case BAM to CNV | universal | yes | b37 |
Somatic CNV PON creation | Normal BAMs to PON | universal | yes | b37 |
Documentation for these workflows is in development.
1 comment
Where can we find a description on what all of the outputs of the somatic copy number pipeline are?
In particular we want to know what each of these seg files are:
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