Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

RNAseq short variant discovery (SNPs + Indels) Follow

1 comment

  • Avatar
    An Zheng

    Hi Team,

     

    Thanks for your incredible work. I'm looking for RNA-Seq somatic SNPs and indels calling pipeline and I found this article. However when I enter the github pages (https://github.com/gatk-workflows/gatk3-4-rnaseq-germline-snps-indels) it shows "germline short variant discovery", not somatic. Do you have somatic short variant discovery pipeline? Thank you.

     

    Zheng

    0
    Comment actions Permalink

Please sign in to leave a comment.

Powered by Zendesk