Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

GATK process banner

Need Help?

Search our documentation

Community Forum

Hi, How can we help?

Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

Articles in this section

See more

HaplotypeFilteringAnnotation Follow

Avatar
GATK Team
  • Updated

Summary of the haplotype filtering steps.

Category Flow Annotations

Overview

Set of annotations meant to be reflective of HaplotypeFiltering operations that were applied in FlowBased HaplotypeCaller.

Return to top

GATK version 4.6.2.0 built at Sun, 13 Apr 2025 15:34:15 -0400.

0 comments

Please sign in to leave a comment.

Powered by Zendesk