Metrics
Category Metrics
Overview
Summary metrics produced by {@link CollectSequencingArtifactMetrics} as a roll up of the context-specific error rates, to provide global error rates per type of base substitution. Errors are normalized to the lexically lower reference base and summarized together. E.g. G>T is converted to C>A and merged with data from C>A for reporting.This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| REF_BASE |
The reference base (or it's complement). |
| ALT_BASE |
The alternative base (or it's complement). |
| SUBSTITUTION |
A single string representing the substition from REF_BASE to ALT_BASE for convenience. |
| REF_COUNT |
The number of reference bases observed. |
| ALT_COUNT |
The number of alt bases observed. |
| SUBSTITUTION_RATE |
The rate of the substitution in question. |
GATK version 4.6.0.0-33-gdffedfb built at Wed, 23 Oct 2024 21:44:48 -0400.
0 comments
Please sign in to leave a comment.