Metrics
Category Metrics
Overview
a metric class for describing FP failing reads from an Illumina HiSeqX lane *This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| TILE |
The Tile that is described by this metric |
| X |
The X coordinate of the read within the tile |
| Y |
The Y coordinate of the read within the tile |
| NUM_N |
The number of Ns found in this read |
| NUM_Q_GT_TWO |
The number of Quality scores greater than 2 found in this read |
| CLASSIFICATION |
The classification of this read: {EMPTY, POLYCLONAL, MISALIGNED, UNKNOWN} (See PFFailSummaryMetric for explanation regarding the possible classification.) |
GATK version 4.6.0.0-33-gdffedfb built at Wed, 23 Oct 2024 21:44:48 -0400.
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