Metrics
Category Metrics
Overview
Class that holds metrics about the Genotype Concordance contingency tables.This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| VARIANT_TYPE |
The type of the event (i.e. either SNP or INDEL) |
| TRUTH_SAMPLE |
The name of the 'truth' sample |
| CALL_SAMPLE |
The name of the 'call' sample |
| TP_COUNT |
The TP (true positive) count across all variants |
| TN_COUNT |
The TN (true negative) count across all variants |
| FP_COUNT |
The FP (false positive) count across all variants |
| FN_COUNT |
The FN (false negative) count across all variants |
| EMPTY_COUNT |
The empty (no contingency info) count across all variants |
GATK version 4.6.0.0-33-gdffedfb built at Wed, 23 Oct 2024 21:44:48 -0400.
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