Metrics
Category Metrics
Overview
Metric for Illumina Basecalling that stores means and standard deviations on a per-barcode per-lane basis. Averages and means are taken over all tiles.This table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| LANE |
The lane for which the metrics were calculated. |
| MOLECULAR_BARCODE_SEQUENCE_1 |
The barcode sequence for which the metrics were calculated. |
| MOLECULAR_BARCODE_NAME |
The barcode name for which the metrics were calculated. |
| TOTAL_BASES |
The total number of bases assigned to the index. |
| PF_BASES |
The total number of passing-filter bases assigned to the index. |
| TOTAL_READS |
The total number of reads assigned to the index. |
| PF_READS |
The total number of passing-filter reads assigned to the index. |
| TOTAL_CLUSTERS |
The total number of clusters assigned to the index. |
| PF_CLUSTERS |
The total number of PF clusters assigned to the index. |
| MEAN_CLUSTERS_PER_TILE |
The mean number of clusters per tile. |
| SD_CLUSTERS_PER_TILE |
The standard deviation of clusters per tile. |
| MEAN_PCT_PF_CLUSTERS_PER_TILE |
The mean percentage of pf clusters per tile. |
| SD_PCT_PF_CLUSTERS_PER_TILE |
The standard deviation in percentage of pf clusters per tile. |
| MEAN_PF_CLUSTERS_PER_TILE |
The mean number of pf clusters per tile. |
| SD_PF_CLUSTERS_PER_TILE |
The standard deviation in number of pf clusters per tile. |
GATK version 4.6.0.0-33-gdffedfb built at Wed, 23 Oct 2024 21:44:48 -0400.
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