Metrics
Category Metrics
Overview
Metrics for Illumina Basecalling that stores median phasing and prephasing percentages on a per-template-read, per-lane basis. Phasing refers to the fraction of molecules that fall behind or jump ahead (prephasing) during a read cycle. For each lane/template read # (i.e. FIRST, SECOND) combination we will store the median values of both the phasing and prephasing values for every tile in that lane/template read pair. @author jgentryThis table summarizes the values that are specific to this metric.
| Metric | Summary |
|---|---|
| LANE | Illumina flowcell lane number |
| TYPE_NAME | Defines an Illumina template read number (first or second) |
| PHASING_APPLIED | Median phasing value across all tiles in a lane, applied to the first and second template reads |
| PREPHASING_APPLIED | Median pre-phasing value across all tiles in a lane, applied to the first and second template reads |
GATK version 4.6.0.0 built at Sat, 29 Jun 2024 20:47:29 -0400.
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